PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G200100.1.p
Common NamePRUPE_ppa022963mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 438aa    MW: 47935 Da    PI: 9.1306
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G200100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.23.9e-15213259455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn+ Er+RRdriN+++  L++l+P+a      K +Ka++L ++++Y+ +Lq
  Prupe.5G200100.1.p 213 VHNQSERKRRDRINQKMKALQRLVPNA-----SKTDKASMLDEVIKYLEQLQ 259
                         6*************************9.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.104209258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.3E-17209277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-19212286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.4E-13213259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.63E-15214263No hitNo description
SMARTSM003531.8E-16215264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009704Biological Processde-etiolation
GO:0016607Cellular Componentnuclear speck
GO:0003690Molecular Functiondouble-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MQQNHPNTSR LVPLSNYDVR ELKLENGQLA MHGLGGLLPT SQAKHTWGRA GDTLESVVHQ  60
ATHHKREPNL IHNGQTPANI SSMLASSGRT WTDEGGQVPL AEGWMRKRTR SDSDYHGNNF  120
SGSTTSIHEE HADPSTCASP SPSASAKLCR DNQKIMTTWA SFESLPSLKS TKSPDEDSAS  180
HGGLENQDDG QETTKDGESG RSRSTRPKRA AAVHNQSERK RRDRINQKMK ALQRLVPNAS  240
KTDKASMLDE VIKYLEQLQA QVQMMSSVRN MPHMNMNMNM MMPLGMQQQQ QQQLHQMSFL  300
AHMGMGGNVG PLGLGMGMGI GIIDMSNNMA RMAAHAHHQS IRLPIPHPTP VMAAAPTFIP  360
PFMVPPLMPR HPPSQAKPDP ACTNASDPLP DPYGALLAQQ SMNMDLFNRM AALYHQQVNH  420
TTAATSSPSQ SNHVQGN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1217222ERKRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007210132.10.0hypothetical protein PRUPE_ppa022963mg
TrEMBLM5WDG00.0M5WDG0_PRUPE; Uncharacterized protein
STRINGVIT_17s0000g06930.t012e-97(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129992432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.12e-37bHLH family protein